Dead bolt does not align with the keypad, every time i turn the dead bolt it only goes in so far then i hear a click, and if i push the lock button it doesnt turn i hear a continuous click then the keys turn red

Does my Schlage BE365-CAM BE365CAM505 have a feature that allows it to automatically lock the deadbolt without having to enter code and turn the dial?
Sort of. The lock has what is called the "turnlock" feature. When enabled, you have to only push the Schlage button, then manually turn the dial. When disabled, you have to enter the user code, then turn the dial.

To enable/disable this feature, enter your Programming Code--press the Schlage button--Press 7.

Each time you do this, you toggle between enabled and disabled.

Videos for installing and programming can be found on this page:

http://consumer.schlage.com/Service-Support/Pages/InstructionandManuals.aspx

Scroll down and find them under the heading Electronic Security--Keypad deadbolt 365

1. To program the first code, press the reset button once, then enter your 4-8 digit code on the exterior keypad, then immediately press the middle lock button on the exterior keypad. You will hear a beep. This signals that your code has been accepted.
2. To program the second code, press the reset button twice , then enter your 4-8 digit code on the exterior keypad, then immediately press the middle lock button on the exterior keypad. You will hear a beep. This signals that your code has been accepted.
3. To program the third code, press the reset button 3 time, then enter your 4-8 digit code on the exterior keypad, then immediately press the middle lock button on the exterior keypad. You will hear a beep. This signals that your code has been accepted.

Good lock
Good unlock

http://consumer.schlage.com/Service-Support/Pages/InstallationTroubleshooting.aspx#5
Why can my electronic keypad deadbolt (BE365) be unlocked without a four digit user code when I press the "Schlage" button?This is most likely due to an installation error. When the lock is assembled on the door, two steps of the installation must be followed to insure proper operation. The deadbolt must be installed in the door edge with the bolt retracted, and the gray plastic cam on the interior mounting plate, through which the flat metal driver bar passes, must be pointed down (see below). The gray plastic cam has a triangle embossed on the end opposite the driver bar which should align with a matching triangle on the orange plastic cover plate below. These instructions are also embossed on the orange plastic plate.
Troubleshooting Image 2
If the cam is improperly aligned, the lock must be disassembled to a point where, with the bolt retracted, the cam can be turned to the correct position without moving the bolt. This will require withdrawing the flat driver bar completely from the cam before turning the cam. The driver bar will then pass through the cam at a forty-five degree angle when the lock is reassembled.

I had the same problem with a 2000 grand marquis. i disconnected the keypad and the problem went away.

The LED flashing 5 times is the code for RPM sensor or motor overload. The RPM sensor is a small circuit board just in front of the motor.

I think the trolley has jammed against the bolt just in front of the motor unit. Remove the bolt and then run the door until it is closed. With the door closed locate the 'up limit' control on the side of the motor unit. Turn this 2 turns in the opposite direction of the arrow printed on the cover. Replace the bolt.

Check to see if the trolley (the part that slides back and forth on the rail and is connected to the door) is jammed against the bolt just in front of the motor unit. If so, remove the bolt and run the door until it is closed. On the side of the motor unit there is an 'up limit' control. Turn this 3 turns in the opposite direction of the arrow printed on the cover. Be sure to replace the bolt.

First push the last two buttons on the right on the keypad and see if that locks all locks. If it does not then it sound like there is an intermittent transmitter switch that has gone out, Have a friend engage - disengage until you locate the sound you describe and locate that switch, Pull it and take it to the dealership. Replace it and you should be back in business.

IF U HAVE TWO EYE,SENSORS ON EACH SIDE OF THE DOOR SEE IF SOMETHING IS BLOCKING THE EYES OR SOETHING IS COVERING THEM, OR THEY ARE OUT OF ALIGNMENT, ONE SHOULD SHOW GREEN, AND ONE RED EYE, GOOD LOCK

Touch and hold START more
than 4 seconds. "L" will
disappear and you hear two
beeps. At this time the oven is
ready.