Hi,
Firstly I would get checking the alternator. This should charge the battery as you drive but if it is broken the battery is technically on full power all of the time, even at night when you are sleeping.
The next thing i would check is if you have added any extra electrical equipment lately (speakers, amplifiers, lights etc) as they may have been wired directly to the power and may be taking the charge from the battery.
Hope this helps
SOURCE: 2000 Navigator - something draining on battery - goes dead
Hellokrissypoo4...Your navigator has what is known as a parasitic battery drain...meaning, something in the vehicles system is not turning off...here is the way i test for this, you will need a digitial multimeter to perform this test...when doing this test make sure that the dome light, under hood light, trunk light, etc. are OFF.
Good luck krissy..i hope this helps..please rate me a fixya.
NOTE:
SOURCE: The rear a/c is making a clicking sound/2003 Lincoln Navigator
you have a bad blend door actuator the clicking sound you hear is the plastic gears inside it slipping the panels covering rear unit can be removed once removed cut a/c on once clicking starts you should be able to tell which one it is they are about the size of a cell phone usually twoo or three screws holding on to air box and one small electrical connector remove and call ford dealership with part# listed on the actuator and purchase new one these are not available aftermarket that i know of
SOURCE: 2003 Lincoln Navigator door sensor problems
One of your courtesy light switch's is defective, it can be in any of the five doors (rear hatch has 2), Ford can determine which one (courtesy light switch) is at fault by using a NGS (New Gen Star Tester) to monitor the switches through the Generic Electronic Module of your truck, these switches are attached to the door latch assembly and are time consuming to replace, so the Ford tester is the cheapest option.
SOURCE: HOW TO REMOVE A HEATER CORE IN A 2003 LINCOLN NAVIGATOR
U must remove the entire dash assembly and then the heater core housing which is part of the air distribution box, time to do the job 10-15 hours.
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