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If the target storage area is insufficient this will happen. Clear disk space, run 'defrag' to make space contiguous and try.
Also if you choose 24 bit color in TIF mode, it will take time to write onto disk leading to stopping in between scans.
Had this before and after a day of playing about with cleaning out the windows temp folders, I simply uninstalled all the driver and toolbox software, downloaded the latest version from Canon's site and reinstalled it. After doing a bit of research, found out it was caused by a windows update conflicting with the drivers
I have just cured this"not enough space on the target disc" on my set up.I had the problem from day one after buying scanner but learned to get around it.Today I went into Toolbox and opened settings and made a note of the target address. Then checked properties of the target folder and found there was 86mb in a space for 80mb.This was the default setting chosen by the installation programme. I went to my documents and made a new folder and called it Canoscan, clicked ok and it became the new target and the fault is gone. Hope it works for others.
Have had the same problem, seems to come and go a bit... Quickest & easiest fix is to go to CanoScan toolboox > Settings then press the 'defauls' button at bottom... this sets everything back to factory settings and should fix your problem. Cheers.