Hello download a manual here at MSI:
http://www.msi.com/product/mb/K9N-SLI-V2.html#/?div=Manual
You need to unzip the file when downloaded.
I guess the bios upgrade set the usb function off
You have to enter the bios and set it on again.
Look in the manual how you do that.
You need a PDF reader to read content.
Good luck
SOURCE: I have an msi ms-7390 k9n sli ver 2 motherboard
move the sata connection for your bootable HDD to another port like 3 or 4 and the bios will detect then run bios setup to boot from the sata 3 or 4 and it works like normal, must be a bug in sata 1 and 2. had same issue trying to install win7 x64. Win 7 refuses to detect sata DVD drive, moved it on the MB and it installed fine.
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