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http://www.guitarelectronics.com/category/wiring_resources_guitar_wiring_diagrams.humbucker_wiring_color_codes/ here are the relative color codes for brands...you can find wiring diagrams galore at seymourduncan.com or emg.com...just match the number of pickups and controls and look up your diagram
The Fender pick up has two wires, blue and white. The Jackson has four: red, green ,black, and white.
1st. Determine the hot wire and the ground wire on the Jackson pick up and then just replace the Jackson pup with the Fender pup. White on the Fender is the hot lead and blue is for the ground. If you hook it up backwards it will be out of phase with the other pup's and will sound thin and weak when selected with either the rhythm pup or the lead pup. Of course, by itself it will sound normal because switching the wires only changes the phase of the Fender pup.
On the Jackson pup, the green and black are ground while the white and red are the hot side. Just solder the white lead of the Fender pup to the pup selector hot side and the blue lead to the ground.