Converge problem top left corner and bottom center. the crosses in the top left corner are way off and the bottom center are not far off. this is causeing my red and blue lines to be wavey like looking at a 3-d screen in these areas but when trying to converge the crosses they dont respond

A convergence repair kit will need to be installed. The JVC AV48WP30 convergence repair kit from www.tvrepairworld.com has the ICs resistors and the CD with repair instructions.

Get a convergence kit from www.TvRepairKits.com

replaced both convergence ics in the tv.also check for open resistors near the convergence stk ics.

The convergence output IC's need to be changed. A very common problem with all projection tvs.

Unfortunately you will have to replace the convergence board in this unit. it has failed. this particular board regulates the alignment procedure that you are having issues with. replacing this board will fix this issue.

convergence ic's
http://www.techlore.com/blog/entry/19694/Sony-Convergence-Repair-My-Sony-TV-has-a-distorted-picture-/

http://www.digitalhome.ca/forum/showpost.php?p=564268&postcount=220
http://cmpalmer.blogspot.com/2006/11/fixing-my-own-tv-part-ii.html

you have bad convergence ics

You have a componet out of tolerance in the green drive circuits, resistor or capacitor. If you have the service manual you should be able to take some raedings off the test points for the circuit and be able to track it down. I am enclosing a link where you can purchase the service manual for that set for 10.99. They will mail it to you unless you go back to the site and request that they email it to you by clicking on the contact us link. They also offer unlimited free support if you purchase your manual. I am one of their support techs. Hope this helps. Heres the link
http://servicemanuals.vstore.ca/

This doesn't sound like a programming issue. I had a very similar problem about 6 months ago and I fixed problem. I had cold solder joint on the video power board. It was the board in the middle. The power supply was to the right. The video board had a driver with a bunch of legs. About 7 solder joint where cold or loose. I solder the board and my mitsu wide screen was fixed. Hope this helps.
Andy