Eye-to-eye is the unloaded distance between the shock mount ends when its on the bike. Unless the shock could squish down flat the piston travel will be somewhat less than its total length. Effective axle travel from shock compression is a function of the bike design and the shock stroke distance. 145mm is the wheel travel, not the stroke.
Yes, they come in different lengths and stroke distances...
http://www.chainreactioncycles.com/Models.aspx?ModelID=46003
again, for different frame and suspension designs. You need to match the spec for YOUR bike. Unfortunately, no one specs the stroke of the shock when discussing the wheel travel. You may need ask Fuji directly.
http://www.fujibikes.com/contactus
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