Internal damage to Mirage BPSS-210 Subwoofer amp
Something getting hot probably means something shorted out.
You probably know that since you replaced the fuses already...
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Can you give me some idea of what you do and do not know about electronics? Then I will say fewer dumb things.
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When troubleshooting any electronic device, especially amps, open it up and look at the circuit board. Look for burned board and components. Then test to see if the burned/blown component had reason to blow (it probably did).
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Often a shorted transistor runs too much current through some other component and the other component blows up.
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Another cause, less common, is a shorted cap.
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Look at the schematics if you have them, if not, you may have to create one to make sense of it.
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Or take it to a shop where somebody does this all the time. The only one here went belly up in the last 12 months...
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About the pots
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Try blowing out the pots which are popping with some tuner cleaner. Use with caution, and always with everything turned off and power cords unplugged.
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Pots do not usually make popping noises unless they are very old or live in a very dusty place...
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I found the manual, but no schematics...
http://docs.google.com/viewer?a=v&q=cache:9Doi39-AcW0J:www.miragespeakers.com/images/download/374.aspx+Mirage+BPSS-210+schematic&hl=en&gl=us&pid=bl&srcid=ADGEESjBKgLSTb8wp5SRWIOWd-gE0INdBXbfz5QDNJ_3esye4_R2Q9aKba8cEePSWQWOebeXB9zXnJSelIel2bLSR5q6KExe8MVjOk1zqFKk4K-ruti_797yf1Ig3CIcUNjE49jx8DAr&sig=AHIEtbS6udedt_o6GqL7ALPunU0v3vMvuw
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You might be able to get better, more exacting help on the Mirage Forum...
http://community.miragespeakers.com/forums/
But maybe not, since the Subwoofer section gets less than one post per month, and the much busier Technical Questions section only has 23 in the last 12 months.