2004 dodge stratus 2.7 dohc v6 do the cam timing marks (secondary chains) have to be timed with the main primary chain?

Install the cylinder heads. Use new gaskets and tighten the bolts, in sequence, as follows:

1. Step 1: Bolts 1-8 to 20 ft. lbs. (27 Nm)
2. Step 2: Bolts 1-10 verify torque without loosening
3. Step 3: Bolts 9-12 to 10 ft. lbs. (14 Nm)
4. Step 4: Bolts 1-8 plus 1 / 4 (90 degree) turn
5. Step 5: Bolts 9-12 to 19 ft. lbs. (26 Nm)

double posted but this time the CAM pops up.
why not read the FSM first. ? linked below.
or alldata.com . log in and read.

here ill do a paste from JUST install PART chapter.
you are doing ALL THAT book free, REALLY?
https://www.techauthority.com/en-US/Pages/Home.aspx

1. Using a vise, lightly compress the secondary chain tensioner piston until the piston step is flush with the tensioner body. Using a pin or suitable tool, release ratchet pawl by pulling pawl back against spring force through access hole on side of tensioner.
2. While continuing to hold pawl back, Push ratchet device to approximately 2 mm from the tensioner body. Install Special Tool 8514 lock pin into hole on front of tensioner. Slowly open vise to transfer piston spring force to lock pin.
3. Position primary chain tensioner over oil pump and insert bolts into lower two holes on tensioner bracket. Tighten bolts to 250 inch lbs. (28 Nm).
4. Install right side chain tensioner arm. Install Torx®bolt. Tighten Torx®bolt to 250 inch lbs. (28 Nm). CAUTION The silver bolts retain the guides to the cylinder heads and the black bolts retain the guides to the engine block.
5. Install the left side chain guide. Tighten the bolts to 250 inch lbs. (28 Nm).
6. Install left side chain tensioner arm, and Torx®bolt. Tighten Torx®bolt to 250 inch lbs. (28 Nm).
7. Install the right side chain guide. Tighten the bolts to 250 inch lbs. (28 Nm).
8. Install both secondary chains onto the idler sprocket. Align two plated links on the secondary chains to be visible through the two lower openings on the idler sprocket (4 o'clock and 8 o'clock). Once the secondary timing chains are installed, position special tool 8429 to hold chains in place for installation.
9. Align primary chain double plated links with the timing mark at 12 o'clock on the idler sprocket.
10. Align the primary chain single plated link with the timing mark at 6 o'clock on the crankshaft sprocket.
11. Lubricate idler shaft and bushings with clean engine oil. NOTE The idler sprocket must be timed to the counterbalance shaft drive gear before the idler sprocket is fully seated.
12. Install all chains, crankshaft sprocket, and idler sprocket as an assembly . After guiding both secondary chains through the block and cylinder head openings, affix chains with a elastic strap or equivalent. This will maintain tension on chains to aid in installation. Align the timing mark on the idler sprocket gear to the timing mark on the counterbalance shaft drive gear, then seat idler sprocket fully . Before installing idler sprocket bolt, lubricate washer with oil, and tighten idler sprocket assembly retaining bolt to 25 ft. lbs. (34 Nm). NOTE It will be necessary to slightly rotate camshafts for sprocket installation.
13. Align left camshaft sprocket "L" dot to plated link on chain.
14. Align right camshaft sprocket "R" dot to plated link on chain. CAUTION Remove excess oil from the camshaft sprocket bolt. Failure to do so can result in over torque of bolt resulting in bolt failure.
15. Remove Special Tool 8429, then attach both sprockets to camshafts. Remove excess oil from bolts, then Install sprocket bolts, but do not tighten at this time.
16. Verify that all plated links are aligned with the marks on all sprockets and the "V6" marks on camshaft sprockets are at the 12 o'clock position. CAUTION Ensure the plate between the left secondary chain tensioner and block is correctly installed.
17. Install both secondary chain tensioners. Tighten bolts to 250 inch lbs. (28 Nm). NOTE Left and right secondary chain tensioners are not common.
18. Remove all locking pins from tensioners. CAUTION After pulling locking pins out of each tensioner, DO NOT manually extend the tensioner(s) ratchet. Doing so will over tension the chains, resulting in noise and/or high timing chain loads.
19. Using Special Tool 6958, Spanner with Adaptor Pins 8346, tighten left and right . camshaft sprocket bolts to 90 ft. lbs. (122 Nm).
20. Rotate engine two full revolutions. Verify timing marks are at the follow locations: ² primary chain idler sprocket dot is at 12 o'clock ² primary chain crankshaft sprocket dot is at 6 o'clock ² secondary chain camshaft sprockets "V6" marks are at 12 o'clock ² counter balancer shaft drive gear dot is aligned to the idler sprocket gear dot.
21. Lubricate all three chains with engine oil.
22. After installing all chains, it is recommended that the idler gear end play be checked. The end play must be within mm 0.004-0.010 inches (0.10-0.25). If not within specification, the idler gear must be replaced.
23. Install timing chain cover and crankshaft damper.
24. Install cylinder head covers. NOTE Before installing threaded plug in right cylinder head, the plug must be coated with sealant to prevent leaks.
25. Coat the large threaded access plug with Mopar® Thread Sealant with Teflon, then install into the right cylinder head and tighten to 60 ft. lbs. (81 Nm).
26. Install the oil fill housing.
27. Install access plug in left cylinder head.
28. Install power steering pump.
29. Fill cooling system.
30. Connect negative cable to battery.

2001 , no such ani-mule !
"Introduced for the 2002 model year as a replacement for the Cherokee (XJ),"
you meant manufactures date not model and reg. date. sure.
2002 !
3.7L V6 (cop spark ) chain drive cams....
timing ( cam or spark?)
"Ignition timing is controlled by the Powertrain Control Module (PCM). No adjustment is possible"
so Cam timing (alldata.com covers this in detail)
why not post the context, Im doing what.?
im doing a 60k belt swap
or it slipped. or think id did.
or just put in a new head or cam? see , context is 100% important.
im here, going to there.....
im on line, and it shows 4 engines, i think that is wrong, but...

you must be asking chain cam sprocket timing.
im at alldata.com (or FSM)
there are 37 install steps, im not sure what step you want me
to pluck out. but here is my guess. step 8 ,9,10

1. Install both secondary chains onto the idler sprocket. Align two plated links on the secondary chains to be visible through the two lower openings on the idler sprocket (4 o'clock and 8 o'clock). Once the secondary timing chains are installed, position special tool 8429 to hold chains in place for installation.
2. Align primary chain double plated links with the timing mark at 12 o'clock on the idler sprocket.
3. Align the primary chain single plated link with the timing mark at 6 o'clock on the crankshaft sprocket.

step 12:
Install all chains, crankshaft sprocket, and idler sprocket as an assembly . After guiding both secondary chains through the block and cylinder head openings, affix chains with a elastic strap or equivalent. This will maintain tension on chains to aid in installation. Align the timing mark on the idler sprocket gear to the timing mark on the counterbalance shaft drive gear, then seat idler sprocket fully . Before installing idler sprocket bolt, lubricate washer with oil, and tighten idler sprocket assembly retaining bolt to 25 ft. lbs. (34 Nm).

step 13:

1. Align left camshaft sprocket "L" dot to plated link on chain.
2. Align right camshaft sprocket "R" dot to plated link on chain.

step 15/16

1. Remove Special Tool 8429, then attach both sprockets to camshafts. Remove excess oil from bolts, then Install sprocket bolts, but do not tighten at this time.
2. Verify that all plated links are aligned with the marks on all sprockets and the "V6" marks on camshaft sprockets are at the 12 o'clock position.

do ask questions, or login to alldata.com or mitchels
or get a real FSM.
its nothing trivial.

in fact get the book before the job. so are perpared.

Cylinder #1 TDC on compression stroke

if you have dohc the 2.7 has 3 timing chains The primary chain goes around the crank sprocket the the water pump and around two intake cam sprockets. The other two chains run around seperate intake and exhaust cam sprockets, to synchronize the intake and exhaust valve timing.

Something is obviously not proper in the timing case.
Pick up a Chilton's manual,which should give you all the info needed,to rectify your situation. Good luck.

Here are the diagrams for the secondary timing chains (exhaust cam - intake cam) and the primary timing chain. (courtesy of AutoZone)

how i can to find mark timing intrepid 2003 engine 2.7 v6

There should be plated links on those chains too. There is an index dot in both cams on each head that set at the twelve o'clock position.