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That's more then likely the starter relay ! Open the hood an check Relay Box
Left center of engine compartment
See if this is what is clicking ! Do you know about relays an how there work ? Videos on youtube on testing relays an circuits ! Find a wiring diagram at http://www.bbbind.com/free_tsb.html
Lincoln LS has a hydraulic pump driven fan, and there is a relay, under the hood in the fuse/relay box on the driver's side, just behind the battery. The lid of the box has the diagram of the fuses/relays. In this look at the part labeled C107 and c 105
I'm hoping your talking about the fuse box that's inside the vehicle as there is a power distribution box located in the engine compartment that has fuses in it also. In the pictures below is the numbering and locations for the fuses inside the fuse box inside the vehicle. I hope this is what you are looking for. If you need the one for the engine compartment I have that as well just post a reply and I will get it via email and will send you that one as well. I hope this helps and good luck. Here is your pictures:
The 2001 Lincoln Ls v8 has three fuse boxes Located: 1. Under the Hood on the passenger side, 2. Under the dash on the passenger side behind a kick panel, and 3. In the trunk next to the battery where your spare tire is. --->