Most probably the EGR (Exhaust Gas Recirculation system) is full of gunk, generated by the exhaust gas and breeder fumes and needs to be cleaned. Though it might be some other system that triggers this error. You could do the following to see if it can be remedied.
- Check/Clean Exhaust Gas Recirculation (EGR) System
- Check/Replace Exhaust Gas Recirculation (EGR) Valve
- Check Wiring and/or Connector(s) from/to Exhaust Gas Recirculation (EGR) Valve
It is likely this cannot be fixed easily and needs a full diagnostics and system cleanup at the Dealer/Skoda authorized service center. Might cost a lot since you probably need to remove the intake manifold, etc. to get the system cleaned properly.
You can read more about the code and the issue at ross-tech:
16785 P0401 001025