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If you are worried about viruses affecting your computer, I suggest you install an anti-virus program on your computer. There are commercial anti-virus programs such as Nortons and McAfee. There are also freeware anti-virus programs on the Internet, AVG is a good program. Generally commercial programs offer better protection. AVG also offers a commercial version of their freeware anti-virus program. Please click on this link to download freeware AVG should you wish to use this program :- http://free.avg.com/us-en/download-avg-anti-virus-free
First of all take an Anti virus and thoroughly clean your computer of Viruses because the Viruses can make your computer very slow. If you do not have an anti virus you can download free edition of AVG anti virus from the following link. http://free.avg.com/ww-en/download-avg-anti-virus-free Then take a good Registry cleaner. They are many registry cleaners being sold on the internet. Pick a good one and clean your registry it will add extra speed to your computer operation.
if you have an anti virus software the you go on the 4gb pendrive icon and right click and you will see there is an option scan for viruses..Else you can set up manually your software to scan that particular storage drive..