Look at the capacitor. Does it have 3 terminals or just 2. Some capacitors control the fan and the compressor. The terminal on them will be labeled Com (common), Herm (compressor) and Fan. The wire you are talking about probably goes to the Com terminal. The common terminal may also have the Run wire from the fan and compressor attached. Let me know if this doesn't help and I'll try to get a picture to help explain it.
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