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This is the closest manual I could find for this motherboard. The link below will lead you to download a manual for the MS-6380LE (the other models close to this were MS-6378 and MS-6390)
However, it shouldn't be too different.
Please let me know if you still have problem with connection.
Open the link provided; http://www.directron.com/installusb.html
You will need to scroll down until you see, Intel Standard USB header Layout. Also see: Common USB case header connectors.
Hope this is what you're looking for.