Replace the Fan. Normally on desktops there are two fans. One in the Power Supply and One that sits on top of the CPU Heat Sink. The computer will run hot and shut down if the fan is not running. This can cause damage to the motherboard.
Now some systems the fan will turn on and off as needed. if your system is not shutting down or you are not getting any messages about the fan or having boot issues because of the fan, don't worry about it. It will turn on when needed.
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Did you check the PSU( Power Supply Unit ) if it is still working? Fan in the PSU runs?
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