Yes it does matter. Your bike either has circuit breakers or fuses. If you connect the wrong wire they will cycle on and off and more than likely create more problems for you. All the wires should be color coded. If there not purchase a clymer manual, trace out your wires and connect the appropriate ones. Question how did the wire get disconnected or sevared? If there is a broken wire you should be able to just connect the wire with no trouble.
Testimonial: "Thank you, I thout so. I have a Honda service manual for 98-02 Shadow aero VT100C3. The connector shorted some how & melted ( I just bought this bike afew days ago) I am going to chase the wire through the harness & from the Reg/Rectifier as I am now checking everything! Thankyou again."
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