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No cylinders fire at same time. 6 & 3 must be from same coil-ignition coil C-that is the one with the problem. And the secondary circuit- that is the spark firing portion of the coil. Coils have a primary winding circuit and a secondary wire winding circuit. The secondary comes out of coil as the tower, or the spark plug wire tower -the business end of the coil leading to the plug.
You could have a bad new coil (happens occasionally) or the connection to that coil may be the problem-the connection where the coil snaps onto the coil pack assembly. Try swapping that coil (coil C) with another one there and see if problem follows the coil. See? Keep your plug wires the same, just swap coils with another and see if the new position for suspect coil causes other cylinders to misfire. If a different coil in that "C" position causes same code, then it is not the coil itself, but probably the base assembly that the coil connects to.
These ignition systems use what is called a waste spark, or exhaust waste spark system. The coil will send spark to 6 & 3 simultaneously, but since one is always on the exhaust stroke while the other is on the compression (firing) stroke, the exhaust spark is very weak, and all the energy from coil is directed to the compression stroke cylinder. It sounds crazy but it works great.
Since you say it runs bad just as before, that indicates the coil is not the problem, but something wrong with the base of the coil pack . This is where the wiring is directed to the coils.
Disconnect the ignition coil output wire at the distributor cap. Connect a spark plug to the end of the ignition coil output wire which you just disconnected. Connect a ground wire to the threaded portion of the spark plug. Disconnect the ignition coil ground wire from the negative terminal on the coil (Green Wire). Connect one end of a ground wire to the ignition coil negative terminal. Turn the ignition switch to the ON position. Tap the other end of the ignition coil ground wire jumper on an good grounding point (for example the battery negative terminal) and look for sparks at the spark plug that correspond to the frequency of your tapping of the ground wire. If you have a good spark at the spark plug, the ignition coil is good. If you don't get a good spark, check for approximately 12 VDC from the coil positive terminal (black wire) to ground with the ignition switch in the ON position. You should also get approximately 12 VDC from the coil negative terminal (Green wire) to ground Ignition Coil Resistance Check
In addition to the test above, you may elect to perform an ignition coil resistance check as confirmation of the coil's condition.
Check the ignition coil primary coil resistance by connecting an ohmmeter between the positive (Black wire) and negative (Green wire) terminals on the coil. The resistance should be 0.4 to 0.6 ohms. Check the ignition coil secondary coil resistance by connecting an ohmmeter between the coil output terminal and the ignition coil negative terminal. The resistance should be 5000 to 7200 ohms.
You may have a bad coil or bad ground or wire connection
Firing Order for 6.0L
1-8-7-2-6-5-4-3 Cylinders:
(back of vehicle)
8----------7
6----------5
4----------3
2----------1 Ignition Coils are adjacent to the corresponding Cylinder
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