Changed battery and alarm system goes on. I do not know how to disconnect or turn the system off. I never had a remote entry key

Disarming an Armed System/Silencing an Alarm
If system arming has been requested by the keyless entry transmitter, it must be disarmed.
Important: Using the power door unlock switch or manually unlocking the doors does not disable the CTD armed mode. Also, disconnecting the battery or pulling fuses does not disable the armed mode, since the BCM stores the CTD mode status in memory.
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To disarm the CTD system in arm pending mode, SECURITY indicator flashing and doors open, perform 1 of the following:

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Press the UNLOCK button on the keyless entry transmitter.

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Insert a valid key into the ignition and start the vehicle.

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To disarm the CTD system in the armed mode:

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Press the UNLOCK button on the keyless entry transmitter.

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Insert a valid key into the ignition and start the vehicle.

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To disarm the CTD system when activated, alarming mode.

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Press the UNLOCK button on the keyless entry transmitter.

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Insert a valid key into the ignition and start the vehicle.

Your Sonata is equipped with a "Keyless Entry & Burglar Alarm" system. When the Burglar Alarm is activated, it KILLS the starting system through the used of a relay called the "Burglar Alarm Relay". This mode prevents engine starting with the key.
Solution #1
Disarm the system with the Keyless Remote (key fob) If you don't have this remote (or its battery is dead) replace the battery & try disarming again.
Solution #2
Enter the vehicle & insert the key in the ignition and turn the ignition switch to 'RUN'. Wait 3 to 5 minutes until the alarm stops. You should then be able to start the engine.

Have a qualified/certified Hyundai Service Technician properly diagnose this issue.

anti theft light should blink every few seconds.

try disconnecting the battery for 15 minutes.

Anti-Theft-Perimeter The perimeter anti-theft system consists of the following components:

• anti-theft indicator (THEFT)
• remote anti-theft personality (RAP) module
• hood switch
• keyless entry remote transmitter
• deck lid ajar switch

NOTE: The remote entry features will not function when the ignition switch is in the RUN or ACC position.
Up to four keyless entry remote transmitters (15K601) can be programmed at one time.
The keyless entry remote transmitters :

• Are programmable.
• Must be set at the same time.
• House four buttons.
• House three buttons (Mexico Anti-Theft System only).

Programming
Refer to Section 501-14B.
Inputs and Outputs
The remote anti-theft personality (RAP) module receives input from the following components for anti-theft operation:

• Hood switch.
• Deck lid ajar switch.
• Keyless entry remote transmitter.
• Power door lock switches (LH and RH).
• Door courtesy input.

The RAP module distributes output to the following for the anti-theft system:

• Power door unlock relay.
• Power door lock relay.
• Liftgate unlock relay (Wagon)
• Park lamps relay.
• HORN relay.
• Dome lamp.
• THEFT indicator.
• Deck lid release.

Arming
The anti-theft system can be armed if:

• The ignition switch is in the OFF position.
• The panic alarm is off.
• All doors are closed.

NOTE: If a door is open, the anti-theft system is prearmed and waiting for all the doors to be closed. The THEFT indicator will remain illuminated for up to 30 minutes waiting for all the doors to be closed. If a door remains open after 30 minutes, the THEFT indicator will turn off and the system will return to a disarmed state. After all doors are closed and the 30 second prearm (continuous THEFT indicator illumination) is complete, the system is armed.
NOTE: If the theft LED does not flash after 30 seconds, check the LED FLASH PID to see if the feature is enabled.
The anti-theft system will be armed when the lock button on the keyless entry remote transmitter is pressed, all doors are closed and 30 seconds have elapsed.
When the system is armed, the THEFT indicator will flash quickly until the system is triggered or disarmed.
Disarming
NOTE: Using a key in a door lock cylinder to unlock is not a valid method of disarming the anti-theft system.
Untriggered System
NOTE: If the driver arms the system and remains in the vehicle, an untriggered system can be disarmed by turning the ignition switch to the ON position.
An untriggered alarm system can be disarmed by pressing the unlock button on the keyless entry remote transmitter.
Triggered System
NOTE: If the hood or trunk are open when the system is armed, it must be closed and opened again before it can trigger an alarm.
An armed anti-theft system can be triggered by the following conditions:
The deck lid door, liftgate, hood or any door is opened using a key, inside door handle, hood release, etc.

• The keyless entry remote transmitter can activate a panic alarm which is similar to the anti-theft alarm, but does not cause the THEFT indicator to flash.

A triggered alarm system can be disarmed by:

• Pressing the unlock or panic button on the keyless entry remote transmitter.
• Turning the ignition switch to the ON position.

Alarm State When Battery Power Is Cycled
When the RAP module is supplied power the first time at the vehicle assembly plant, the system will be in the disarmed state. The RAP module will remember whether it is armed, disarmed or triggered in its non-volatile memory. When the battery positive cable is removed and then reconnected, the system will return to the state it was in just before the battery was disconnected. If the system is in any prearm state, then the system will return to a disarmed state when the battery is disconnected and then reconnected.

when you open the fob to change the battery, make sure that none of the soldering on the circuit board has come loose, and if it has, you can pick up a soldering iron for 15 bux, or a new key fob for 350

After replacing the batteries in your key remotes, you need to have the keyless entry module re-learn each of the remotes. This requires a diagnostic tool at the dealership or locksmith.

There is NO kill switch on the 2000 Elantra... HOWEVER, there is a thing called the Key Fob (keyless remote entry system). There is, however, a system in place called the 'starter kill' circuit and it is activated when the burglar alarm goes off.... it's called the burglar alarm relay and it is activated to prevent the engine starter system from being used. There are three ways to get the engine started in such a circumstance... 1. use the key fob to 'disarm' the system... 2. put the key in the ignition and turn it to the 'RUN" position and wait until the alarm stops (horn stops beeping and the parking lights stop flashing), then the engine will start.... 3. pull the starter relay from the UnderHood junction box and bypass the starter circuit (key in ignition and in the 'RUN' position), jumper the starter solenoid circuit to energize the solenoid to start cranking the engine -- it should start then.

usually after opening the door you can deactivate the alarm by pushing th unlock button or simply insert keyy in ignition and turn it on.

Unfortunately, the keyless entry remotes and OE systems usually require a dealership to service them. Sounds to me like they need to re-set the alarm

Section 13-11: Anti-Theft System, Active 1998 Windstar Workshop Manual DESCRIPTION AND OPERATION Anti-Theft Alarm System NOTE: The system immediately monitors the ignition key lock cylinder upon removal of the key from the ignition. It is not necessary to arm the system for ignition key lock monitoring.

The anti-theft alarm system:

• protects the vehicle from unauthorized entry into the passenger compartment, engine compartment and cargo area.
• monitors the status of the ignition key lock cylinder.
• is controlled by a remote anti-theft personality (RAP) module. The remote anti-theft personality module also controls the electronic door lock functions. Refer to Section 01-14B for more details.
• when armed, detects unauthorized entry into the passenger compartment by using an input from the GEM module regarding the state of the door or liftgate (open or closed).
• protects the engine compartment with a hood switch which is located on the LH cowl vent panel and is part of windshield wiper motor wiring (17A477) .
• triggers an alarm if the ignition lock cylinder is forcibly removed from the steering column.

Once triggered, the system responds by:

• flashing the low beam headlamps, the parklamps, rear lamps and the alarm indicator warning light emitting diode (LED).
• sounding the horn (13832).
• disabling the starter circuit until the system is disarmed.

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Remote Anti-Theft Personality Module

• The remote anti-theft personality module is located behind the instrument panel (04320).
• It contains a radio receiver that receives the RF signal from the keyless entry remote transmitter (15K601) through the alarm and lock system antenna (15603) and sends the appropriate command to the power door locks, the horn relay, or the generic electronic module.
• The remote anti-theft personality module is equipped with an internal backup power supply which holds the programmed code in memory in the event the vehicle battery is disconnected.

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Remote Anti-Theft Personality Module Removal

1. Disconnect battery ground cable (14301). Refer to Section 14-01 .
   

1. Remove radio. Refer to Section 15-01 .
   

1. Remove lower instrument panel center finish panel. Refer to Section 01-12 .
   

1. Lower glove box.
   

1. Remove two remote anti-theft personality module bracket retaining screws.
   

1. Disconnect electrical connectors and alarm and lock system antenna (15603).
   

1. Remove remote anti-theft personality module and bracket.
   

1. Remove remote anti-theft personality module from mounting bracket.
   

Installation

1. To install, follow removal procedure in reverse order.
   

1. Tighten remote anti-theft personality module bracket retaining screws to 6-8 Nm (54-70 lb-in).
   
   

Components The system is composed of the following components:

• remote anti-theft personality (RAP) module with integral antenna
• alarm indicator LED
• door lock cylinder switch RH, door lock cylinder switch LH
• liftgate door lock cylinder switch (220A40)
• hood switch (part of windshield wiper motor wiring (17A477))
• ignition lock anti-theft switch (19A438)

The following vehicle components are also used by the anti-theft alarm system:

• generic electronic module
• power door lock switch (14028)
• door open warning lamp switch (14018)
• autolamp relay (14N089)
• horn relay and bracket (13853) and horn (13832)
• low beam headlamps
• rear lamps (13404) and parking lamps (13200)
• starter relay
• door lock relays
• keyless entry remote transmitter (15K601)

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Disarming an Untriggered System NOTE: A perimeter alarm will "shut off" after 165 seconds, but the system is still triggered and is not disarmed.

An armed but untriggered perimeter anti-theft system can be disarmed by one of the following four events:

1. Unlock the doors by pressing the keyless entry remote transmitter (15K601) UNLOCK button once.
2. Unlock any door with a key.
3. Turn ignition switch to RUN or ACC.
4. The remote entry PANIC button will disarm the anti-theft system only when the perimeter alarm is triggered and sounding.

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System Triggering NOTE: Although the remote entry PANIC alarm is not associated with the monitoring of the vehicle, the user will frequently say that the theft system was triggered when actually the keyless entry remote transmitter PANIC button was inadvertently pressed. A panic alarm will not flash the THEFT indicator.

The alarm can be triggered by the following events if the system has been armed and has not been disarmed first:

• Open any door or liftgate.
• Open the hood (16612) (if the hood was open when the system was armed, it must be closed before it can trigger the alarm).
• Dislodge the ignition key lock cylinder.
• The anti-theft system may be triggered inadvertently when the module is disconnected and then reconnected. To avoid inadvertent alarm triggering, disconnect the smaller 22-way connector first.

When the system is triggered the perimeter alarm will operate as follows: The remote anti-theft personality module will pulse the following outputs at approximately 1.3 Hz, 50 percent duty cycle for two minutes 45 seconds for North America. NOTE: Other perimeter alarms can be programmed for the system.

• low beam headlamps
• parking lamps
• horn
• THEFT indicator

The perimeter alarm can be retriggered, after a perimeter alarm has sounded for 165 seconds. After a perimeter alarm has timed out, if any trigger input is first seen as normal and is then seen in its trigger state, the perimeter alarm will be retriggered. The perimeter alarm can be triggered a total of three times between an arming sequence and a disarm event. An active panic alarm will be deactivated when a perimeter alarm is triggered (a perimeter alarm overrides a panic alarm).

it sounds to me like you dont have a key less entry remote on the vehicle, I would check the small switch located behind the driver door lock tumbler (were the key goes in) and to do this
you need to remove the door panel, this switch knows when you
insert the key into the door and turn it to disable alarm, some times they break off - when the alarm goes off try unlocking the
vehicle on the passenger door.