Does the rear wiper operate on a "relay fuse" located under the hood?

Under the dash or under the hood. Probably is a relay also.

Fuse # 14 - 25 amp. location - under hood fuse box . Plus there are two relays - WPR 1 relay # 39 WPR2 relay #40 . location - under hood fuse / relay box .
Fuse for the wiper switch 10amp fuse - located in the BCM - body control module .

Did you check the wiper relay's in the under hood fuse box ? There are two ,wiper run/park relay & wiper high low relay ! Also ,did you check fuse's ? fuse # 11 - 30amp location cental juction box . The wiper switch is a input to the GEM module . Generic electronic module . The module in most cases isn't the problem ! Learning how to test these electronic systems is , people do not know how to test so they just replace parts . What they should do is take the vehicle to ford certified Technician who has the knowledge and testing equipment to find an fix it .

The generic electronic module (GEM) receives inputs from the following:

• multifunction switch
• anti-lock brake control module (vehicle speed signal [VSS])
• ignition switch

The GEM uses these inputs to control the outputs to the following:

• windshield wiper high/low relay
• windshield wiper run/park relay
• windshield washer relay
• rear wiper motor relay
• rear window washer relay
• 
  GEM Diagnostic Trouble Code (DTC) Index DTC Description Source Action B1240 Wiper Washer Rear Pump Relay Circuit Failure GEM GO to Pinpoint Test K . B1241 Wiper Washer Rear Pump Relay Circuit Short to Battery + GEM GO to Pinpoint Test K . B1342 ECU is Defective GEM CLEAR the DTCs. REPEAT the GEM self-test. If DTC B1342 is retrieved, INSTALL a new GEM. REFER to Section 419-10 . B1431 Wiper Brake/Run Relay Circuit Failure GEM If the windshield wipers are inoperative, GO to Pinpoint Test B .
  If the windshield wipers stay on continuously, GO to Pinpoint Test C . B1432 Wiper Brake/Run Relay Circuit Short to Battery GEM GO to Pinpoint Test B . B1434 Wiper Hi/Low Speed Relay Coil Circuit Failure GEM GO to Pinpoint Test D . B1436 Wiper Hi/Low Speed Relay Coil Circuit Short to Battery GEM GO to Pinpoint Test D . B1438 Wiper Mode Select Switch Circuit Failure GEM If the windshield wipers are inoperative, GO to Pinpoint Test B .
  If both the windshield and rear window wipers are inoperative, GO to Pinpoint Test L . B1441 Wiper Mode Select Switch Circuit Short to Ground GEM GO to Pinpoint Test C . B1446 Wiper Park Sense Circuit Failure GEM If the intermittent windshield wiper speed does not operate correctly, GO to Pinpoint Test E .
  If the speed dependent interval mode does not operate correctly, GO to Pinpoint Test G .
  If both windshield and rear wipers are inoperative, GO to Pinpoint Test L . B1450 Wiper Wash/Delay Switch Circuit Failure GEM If the intermittent windshield wiper speed does not operate correctly, GO to Pinpoint Test E .
  If the wash and wipe function does not operate correctly, GO to Pinpoint Test F .
  If both the windshield and rear wipers are inoperative, GO to Pinpoint Test L . B1453 Wiper Wash/Delay Switch Circuit Short to Ground GEM If the windshield wipers stay on continuously, GO to Pinpoint Test C .
  If the wash and wipe function does not operate correctly, GO to Pinpoint Test F . B1458 Wiper Washer Pump Motor Relay Circuit Failure GEM GO to Pinpoint Test F . B1460 Wiper Washer Pump Motor Relay Coil Circuit Short to Battery GEM GO to Pinpoint Test F . B1473 Wiper Low Speed Circuit Motor Failure GEM If the windshield wipers are inoperative, GO to Pinpoint Test B .
  If the windshield wipers do not operate at high or low speed correctly, GO to Pinpoint Test D .
  If the intermittent windshield wiper speed does not operate correctly, GO to Pinpoint Test E . B1475 Accessory Delay Relay Contact Short to Battery GEM REFER to Section 501-11 . B1476 Wiper High Speed Circuit Motor Failure GEM If the windshield wipers are inoperative, GO to Pinpoint Test B .
  If the windshield wipers do not operate at high or low speed correctly, GO to Pinpoint Test D .
  If the intermittent windshield wiper does not operate correctly, GO to Pinpoint Test E . B1611 Rear Wiper Mode Switch Circuit Failure GEM GO to Pinpoint Test H . B1614 Rear Wiper Mode Switch Circuit Short to Ground GEM GO to Pinpoint Test I . B1820 Rear Wiper Motor Up Relay Circuit Short to Battery + GEM GO to Pinpoint Test H . B1839 Rear Wiper Motor Circuit Failure GEM GO to Pinpoint Test H . - All other DTCs. GEM REFER to Section 419-10

In the under hood fuse box , should have diagram inside the lid . Front wiper's or rear ? Front fuse # 36 - 25 amp. Plus Two relay's PCB hi and Wiper PCB relay . Wouldn't think this being fuse problem . Wiper switch , motor etc... The wiper's are control by a computer . BCM - body control module .

The windshield wiper/washer system consists of front and rear wipers. The front and rear wipers are operative when the vehicle is in accessory or run. The front wipers have 4 different modes: Mist, Intermittent, Low, and High. When the front wipers are in the intermittent mode, there are 5 delay modes to chose from, commanded by the windshield wiper washer switch through the body control module (BCM). The rear wipers has an only one mode.

If the fuse is bad , could have a short to ground or wiper motor pulling to much current (amps) . Fuse's don't just blow for no reason ! Could also have DTC'S - diagnostic trouble codes stored in the BCM .
DTC B3715
DTC B3873
DTC B3875
DTC B3922

DTC B3715 02: Front Wiper Relay Drive Circuit Short to Ground
The body control module (BCM) controls the wiper motor based on input from the windshield wiper washer switch. The BCM monitors the wiper washer switch through three separate signal circuits and a ground circuit. The windshield wiper switch high signal circuit is used to determine high speed wiper operation, the windshield wiper switch low signal is used to determine low speed, intermittent, and mist operation through the use of a resistor ladder, and windshield washer switch signal circuit is used to determine washer operation.
The BCM controls the windshield wiper motor through two output controls, controlling two different PCB relays which control the desired wiper speed, high or low.
DTC B3922 00: Front Wiper Function Select Circuit

The PCB relay's are non- servicable , replace fuse box . Soldered in Your best bet mit be to take it to a qualified repair shop .

WPR fuse 25amp under hood fuse box .
Wiper/Washer System Components
The Wiper/Washer System consists of the following components:
• Windshield wiper/washer switch
• Body control module (BCM)
• Wiper PCB relay
• Wiper high PCB relay
• Windshield wiper motor
• Windshield washer fluid pump
• Windshield washer fluid level switch
• WPR fuse 25 A
• WSW fuse 10 A
This is more then likely not a fuse issue !!!!!!!
Low Speed Operation
When the wiper switch is in the low speed position, ground is applied through the switch internal resistor and the wiper switch low signal circuit to the body control module (BCM). In response to this signal, the BCM energizes the WIPER PCB relay by applying battery voltage through the wiper relay control circuit to the coil side of the relay. This allows battery positive voltage from the WPR fuse to flow through the switch input side of the WIPER PCB relay and out to the switch input side of the WIPER HIGH PCB relay. Since the wiper high relay is de-energized and its switch contacts are normally closed to the low speed control circuit of the windshield wiper motor, the motor will operate at low speed.
Wiper motor low speed operation and the wiper PCB relay can also be commanded ON/OFF by using a scan tool. Refer to Control Module References.
The PCB relays mentioned above are soldered right into the circuit board inside the fuse/relay block under the hood . There are alot of reasons for the wipers not to work ! The fuse could be blown but fuse's don't just blow for no good reason , short to ground , low resistance high current flow etc.... Intermittant !

Power and Grounds
With the ignition in the ON position, accessory voltage is supplied through the 25A WPR fuse to the WIPER PCB relay, the WIPER HIGH PCB relay and the WS WASH PCB relay that are all located in the underhood fuse block. Refer to Wiper/Washer Schematics.
G200 provides ground for the windshield wiper motor and the WIPER PCB relay. G100 provides ground for the windshield washer fluid pump and the windshield washer fluid level switch.

What year ? The relay's are located in the under hood fuse box .
With the ignition in the ON position, accessory voltage is supplied through the 25A WPR fuse to the WIPER relay, the WIPER HI relay and the WSH relay that are all located in the underhood fuse block. Refer to Wiper/Washer Schematics. Which wipers are you talking about ? Front or rear . Rear wiper fuse is in the I/P instrument panel fuse box .
Fuse Block - I/P
Under the lower right side of the instrument panel

The wiper fuse is located under hood
Hope this helps?

Have you tried looking under the cap of the hat bus the relays are in?

no the relay will be located in a box mark relay or fuse open box look at top a daghme will show witch relay is the wiper

The wiper relay in a Pontiac Vibe is located in the under hood fuse box. With the ignition in the ON position, accessory voltage is supplied through the 25A WPR fuse to the WIPER relay, the WIPER HI relay and the WSH relay that are all located in the underhood fuse block.