swaps are the most complex topic on cars, near infinite possibles.
my guess is OE fit. (stock for stock)
all transmission match engine power rating
and some have same box but run special clutch (bigger)
you never said what engine
, so cant really answer... right.
after all the bell housing flange shapes dictate fit. there.
and what clutch works there....
1996 had what.
Gen 2 troopers had. 5 engines.
3.2 L 6VD1 SOHC V6
3.2 L 6VD1 DOHC V6
3.5 L 6VE1 DOHC V6
3.0 L 4JX1 TD I4
3.1 L 4JG2 TD I4
my wild guess 2, is he 6vx1 something,.
the V6 engine.
id say all v6 transmission fit, off hand.
is this the v6 turbo engine option?
to get a more prefect answer, try the only people that do that
the hollander data base. (wreckers all use this (savvy ones)
i think the stock trans is, MSG-5F
(up to 1995 and 2.6L max)
so get one of those an be sure it fits your transfer case?
fits all trooper ,amigo and rodeos/
or read real forums asking this question?
best yet, see all those transmission m/t here
so is a MUA-5C box starting in 1996
this fits the bigger V6, (unstated by you)
Honda pass port, same engine, same box.?
the newer trans has and electric shifted 4wd section.
so if not hollanders DB
try google , if MUA-5C
see that results, if you do that , all cars it fits may show up there for free
best is to first learn whats there.