Do you have he owners manual? instructions are in there for the keyless entry system. If not go to this link:
http://www.motorcraftservice.com/pubs/content/~WOTEXP/~MUS~LEN/41/96expog1e.pdf
Go to page 157 of PDF manual also did you check the fuse
programming mode:
Turn Ignition from OFF to RUN 8 times within 10 seconds,
with the 8th time ending in RUN.
All doors will lock then unlock to confirm programming mode.
Within 20 seconds, press any button on remote
transmitter. Door locks will cycle to confirm programming. Turn
ignition to OFF. Locks will cycle again to indicate end of programming
mode.
check this link it will help you sure
www.ford-forums.com/ford-windstar/19619-windstar-99-programming-mode-not-working-keyless-remote.html
Programming
NOTE: All keyless entry remote transmitters must be programmed at the
same time.
To program (or reprogram) the keyless entry remote transmitters into the RAP
module, perform the following steps:
1. Make sure that the anti-theft system is not armed or triggered.
2. Turn the ignition switch from OFF to RUN five times within ten seconds,
ending in RUN. If the RAP module has successfully entered program mode, it will
lock and then unlock all doors.
3. Press any button on a keyless entry remote transmitter, and the doors will
lock and then unlock to confirm that each keyless entry remote transmitter has
been programmed.
4. If the door locks do not respond for any keyless entry remote transmitter,
wait several seconds and press the button again. If the door locks still fail to
respond, refer to Diagnosis and Testing in this section.
5. Turn the ignition switch to the OFF position, or wait up to five minutes
after step 2, to exit program mode. If a keyless entry remote transmitter has
been programmed (or reprogrammed), the RAP module will lock and unlock all doors
one last time to confirm.
Entry Code
The system (permanent) entry code is located in three places: on the owner's wallet code card (in glove compartment)
electronically accessible by requesting the
remote anti-theft personality module KEYCODE PID on the New Generation
Star (NGS) Tester on the remote anti-theft personality module housing
The remote anti-theft personality module is programmed at the factory
with a five-digit entry code. A replacement remote anti-theft
personality module includes replacement labels and a new owner's code
card. To turn on the interior lamps and light all illuminated
components: press any button on the keyless entry keypad (14A626).
To program a temporary access code: Enter the permanent code on the keyless entry keypad.
Press button 1/2 within 5 seconds of last digit of permanent code. (This alerts system to accept temporary code.)
Enter alternate five-digit code. Do not exceed 5
seconds between entering digits or between pressing the 1/2 key and
entering the first digit.
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