My 94 SW1 did the same thing, that is the same basic engine but a SOHC. I replaced the crank position sensor which is in the block behind the starter and the problem went away. There are most likely other problems which can cause stalling, vapor lock due to bad gas cap for one, but mine was fixed by replacing the sensor. Bit of problem getting to it, but you were already in the area when you replaced the fuel filter.
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